Evaluation tool for feature detection algorithms.
To plot the ROC curve you might use:
The command line parameters of this tool are:
FFEval -- Evaluation tool for feature detection algorithms.
Version: 1.11.1 Nov 14 2013, 11:18:15, Revision: 11976
Usage:
FFEval <options>
Options (mandatory options marked with '*'):
-in <file>* Feature input file, which contains the data to be tested against the truth file.
(valid formats: 'featureXML')
-truth <file>* Truth feature file that defines what features should be found. (valid formats: 'feat
ureXML')
-rt_tol <double> Allowed tolerance of RT relative to average feature RT span. (default: '0.3' min:
'0')
-rt_tol_abs <double> Allowed absolute tolerance of RT (overwrites 'rt_tol' if set above zero). (default:
'-1' min: '-1')
-mz_tol <double> Allowed tolerance in m/z (is divided by charge). (default: '0.25' min: '0')
-out <file> Feature output file. If given, an annotated input file is written. (valid formats:
'featureXML')
-abort_reasons <file> Feature file containing seeds with abort reasons. (valid formats: 'featureXML')
-out_roc <file> If given, a ROC curve file is created (ROC points based on intensity threshold) (val
id formats: 'csv')
Common UTIL options:
-ini <file> Use the given TOPP INI file
-threads <n> Sets the number of threads allowed to be used by the TOPP tool (default: '1')
-write_ini <file> Writes the default configuration file
--help Shows options
--helphelp Shows all options (including advanced)
INI file documentation of this tool:
| OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:24 using doxygen 1.8.5 |