Representation of chromatogram settings, e.g. SRM/MRM chromatograms. More...
#include <OpenMS/METADATA/ChromatogramSettings.h>
Public Member Functions | |
| ChromatogramSettings () | |
| Constructor. More... | |
| ChromatogramSettings (const ChromatogramSettings &source) | |
| Copy constructor. More... | |
| virtual | ~ChromatogramSettings () |
| Destructor. More... | |
| ChromatogramSettings & | operator= (const ChromatogramSettings &source) |
| bool | operator== (const ChromatogramSettings &rhs) const |
| Equality operator. More... | |
| bool | operator!= (const ChromatogramSettings &rhs) const |
| Equality operator. More... | |
| const String & | getNativeID () const |
| returns the native identifier for the spectrum, used by the acquisition software. More... | |
| void | setNativeID (const String &native_id) |
| sets the native identifier for the spectrum, used by the acquisition software. More... | |
| const String & | getComment () const |
| returns the free-text comment More... | |
| void | setComment (const String &comment) |
| sets the free-text comment More... | |
| const InstrumentSettings & | getInstrumentSettings () const |
| returns a const reference to the instrument settings of the current spectrum More... | |
| InstrumentSettings & | getInstrumentSettings () |
| returns a mutable reference to the instrument settings of the current spectrum More... | |
| void | setInstrumentSettings (const InstrumentSettings &instrument_settings) |
| sets the instrument settings of the current spectrum More... | |
| const AcquisitionInfo & | getAcquisitionInfo () const |
| returns a const reference to the acquisition info More... | |
| AcquisitionInfo & | getAcquisitionInfo () |
| returns a mutable reference to the acquisition info More... | |
| void | setAcquisitionInfo (const AcquisitionInfo &acquisition_info) |
| sets the acquisition info More... | |
| const SourceFile & | getSourceFile () const |
| returns a const reference to the source file More... | |
| SourceFile & | getSourceFile () |
| returns a mutable reference to the source file More... | |
| void | setSourceFile (const SourceFile &source_file) |
| sets the source file More... | |
| const Precursor & | getPrecursor () const |
| returns a const reference to the precursors More... | |
| Precursor & | getPrecursor () |
| returns a mutable reference to the precursors More... | |
| void | setPrecursor (const Precursor &precursor) |
| sets the precursors More... | |
| const Product & | getProduct () const |
| returns a const reference to the products More... | |
| Product & | getProduct () |
| returns a mutable reference to the products More... | |
| void | setProduct (const Product &product) |
| sets the products More... | |
| const std::vector < DataProcessing > & | getDataProcessing () const |
| returns a const reference to the description of the applied processing More... | |
| std::vector< DataProcessing > & | getDataProcessing () |
| returns a mutable reference to the description of the applied processing More... | |
| void | setDataProcessing (const std::vector< DataProcessing > &data_processing) |
| sets the description of the applied processing More... | |
| ChromatogramType | getChromatogramType () const |
| returns the chromatogram type, e.g. a SRM chromatogram More... | |
| void | setChromatogramType (ChromatogramType type) |
| sets the chromatogram type More... | |
Public Member Functions inherited from MetaInfoInterface | |
| MetaInfoInterface () | |
| constructor More... | |
| MetaInfoInterface (const MetaInfoInterface &rhs) | |
| copy constructor More... | |
| ~MetaInfoInterface () | |
| destructor More... | |
| MetaInfoInterface & | operator= (const MetaInfoInterface &rhs) |
| assignment operator More... | |
| bool | operator== (const MetaInfoInterface &rhs) const |
| Equality operator. More... | |
| bool | operator!= (const MetaInfoInterface &rhs) const |
| Equality operator. More... | |
| const DataValue & | getMetaValue (const String &name) const |
| returns the value corresponding to a string More... | |
| const DataValue & | getMetaValue (UInt index) const |
| returns the value corresponding to an index More... | |
| bool | metaValueExists (const String &name) const |
| returns if this MetaInfo is set More... | |
| bool | metaValueExists (UInt index) const |
| returns if this MetaInfo is set More... | |
| void | setMetaValue (const String &name, const DataValue &value) |
| sets the DataValue corresponding to a name More... | |
| void | setMetaValue (UInt index, const DataValue &value) |
| sets the DataValue corresponding to an index More... | |
| void | removeMetaValue (const String &name) |
Removes the DataValue corresponding to name if it exists. More... | |
| void | removeMetaValue (UInt index) |
Removes the DataValue corresponding to index if it exists. More... | |
| void | getKeys (std::vector< String > &keys) const |
| fills the given vector with a list of all keys for which a value is set More... | |
| void | getKeys (std::vector< UInt > &keys) const |
| fills the given vector with a list of all keys for which a value is set More... | |
| bool | isMetaEmpty () const |
| returns if the MetaInfo is empty More... | |
| void | clearMetaInfo () |
| removes all meta values More... | |
Static Public Attributes | |
| static const char *const | ChromatogramNames [SIZE_OF_CHROMATOGRAM_TYPE+1] |
| Names of chromatogram types corresponding to enum ChromatogramType. More... | |
Protected Attributes | |
| String | native_id_ |
| String | comment_ |
| InstrumentSettings | instrument_settings_ |
| SourceFile | source_file_ |
| AcquisitionInfo | acquisition_info_ |
| Precursor | precursor_ |
| Product | product_ |
| std::vector< DataProcessing > | data_processing_ |
| ChromatogramType | type_ |
Protected Attributes inherited from MetaInfoInterface | |
| MetaInfo * | meta_ |
| pointer to the MetaInfo object. 0 by default More... | |
Additional Inherited Members | |
Static Public Member Functions inherited from MetaInfoInterface | |
| static MetaInfoRegistry & | metaRegistry () |
| retuns a reference to the MetaInfoRegistry More... | |
Protected Member Functions inherited from MetaInfoInterface | |
| void | createIfNotExists_ () |
| creates the MetaInfo object if it does not exist More... | |
Representation of chromatogram settings, e.g. SRM/MRM chromatograms.
It contains the metadata about chromatogram specific instrument settings, acquisition settings, description of the meta values used in the peaks and precursor info.
| enum ChromatogramType |
List of chromatogram names, e.g., SELECTED_REACTION_MONITORING_CHROMATOGRAM. Actual names can be accessed using the ChromatogramNames[] array
Constructor.
Referenced by MSChromatogram< ChromatogramPeakType >::clear().
| ChromatogramSettings | ( | const ChromatogramSettings & | source | ) |
Copy constructor.
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virtual |
Destructor.
| const AcquisitionInfo& getAcquisitionInfo | ( | ) | const |
returns a const reference to the acquisition info
| AcquisitionInfo& getAcquisitionInfo | ( | ) |
returns a mutable reference to the acquisition info
| ChromatogramType getChromatogramType | ( | ) | const |
returns the chromatogram type, e.g. a SRM chromatogram
Referenced by MzMLHandler< MapType >::writeChromatogram_().
| const String& getComment | ( | ) | const |
returns the free-text comment
| const std::vector<DataProcessing>& getDataProcessing | ( | ) | const |
returns a const reference to the description of the applied processing
| std::vector<DataProcessing>& getDataProcessing | ( | ) |
returns a mutable reference to the description of the applied processing
| const InstrumentSettings& getInstrumentSettings | ( | ) | const |
returns a const reference to the instrument settings of the current spectrum
| InstrumentSettings& getInstrumentSettings | ( | ) |
returns a mutable reference to the instrument settings of the current spectrum
| const String& getNativeID | ( | ) | const |
returns the native identifier for the spectrum, used by the acquisition software.
Referenced by MzMLHandler< MapType >::writeChromatogram_().
| const Precursor& getPrecursor | ( | ) | const |
returns a const reference to the precursors
Referenced by MzMLHandler< MapType >::writeChromatogram_().
| Precursor& getPrecursor | ( | ) |
returns a mutable reference to the precursors
| const Product& getProduct | ( | ) | const |
returns a const reference to the products
Referenced by MSChromatogram< ChromatogramPeakType >::getMZ(), and MzMLHandler< MapType >::writeChromatogram_().
| Product& getProduct | ( | ) |
returns a mutable reference to the products
| const SourceFile& getSourceFile | ( | ) | const |
returns a const reference to the source file
| SourceFile& getSourceFile | ( | ) |
returns a mutable reference to the source file
| bool operator!= | ( | const ChromatogramSettings & | rhs | ) | const |
Equality operator.
| ChromatogramSettings& operator= | ( | const ChromatogramSettings & | source | ) |
| bool operator== | ( | const ChromatogramSettings & | rhs | ) | const |
Equality operator.
Referenced by MSChromatogram< ChromatogramPeakType >::operator==().
| void setAcquisitionInfo | ( | const AcquisitionInfo & | acquisition_info | ) |
sets the acquisition info
| void setChromatogramType | ( | ChromatogramType | type | ) |
sets the chromatogram type
| void setComment | ( | const String & | comment | ) |
sets the free-text comment
| void setDataProcessing | ( | const std::vector< DataProcessing > & | data_processing | ) |
sets the description of the applied processing
| void setInstrumentSettings | ( | const InstrumentSettings & | instrument_settings | ) |
sets the instrument settings of the current spectrum
| void setNativeID | ( | const String & | native_id | ) |
sets the native identifier for the spectrum, used by the acquisition software.
| void setPrecursor | ( | const Precursor & | precursor | ) |
sets the precursors
| void setProduct | ( | const Product & | product | ) |
sets the products
| void setSourceFile | ( | const SourceFile & | source_file | ) |
sets the source file
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Names of chromatogram types corresponding to enum ChromatogramType.
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| OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:32 using doxygen 1.8.5 |