This class stores a SRM/MRM transition. More...
#include <OpenMS/ANALYSIS/TARGETED/IncludeExcludeTarget.h>
Public Types | |
| typedef TargetedExperimentHelper::Configuration | Configuration |
| typedef TargetedExperimentHelper::RetentionTime | RetentionTime |
Public Member Functions | |
| IncludeExcludeTarget & | operator= (const IncludeExcludeTarget &rhs) |
| assignment operator More... | |
Constructors and destructors | |
| IncludeExcludeTarget () | |
| default constructor More... | |
| IncludeExcludeTarget (const IncludeExcludeTarget &rhs) | |
| copy constructor More... | |
| virtual | ~IncludeExcludeTarget () |
| destructor More... | |
Accessors | |
| void | setName (const String &name) |
| const String & | getName () const |
| void | setPeptideRef (const String &peptide_ref) |
| const String & | getPeptideRef () const |
| void | setCompoundRef (const String &compound_ref) |
| const String & | getCompoundRef () const |
| void | setPrecursorMZ (DoubleReal mz) |
| sets the precursor mz (Q1 value) More... | |
| DoubleReal | getPrecursorMZ () const |
| void | setPrecursorCVTermList (const CVTermList &list) |
| void | addPrecursorCVTerm (const CVTerm &cv_term) |
| const CVTermList & | getPrecursorCVTermList () const |
| void | setProductMZ (DoubleReal mz) |
| DoubleReal | getProductMZ () const |
| void | setProductCVTermList (const CVTermList &list) |
| void | addProductCVTerm (const CVTerm &cv_term) |
| const CVTermList & | getProductCVTermList () const |
| void | setInterpretations (const std::vector< CVTermList > &interpretations) |
| const std::vector< CVTermList > & | getInterpretations () const |
| void | addInterpretation (const CVTermList &interpretation) |
| void | setConfigurations (const std::vector< Configuration > &configuration) |
| const std::vector < Configuration > & | getConfigurations () const |
| void | addConfiguration (const Configuration &configuration) |
| void | setPrediction (const CVTermList &prediction) |
| void | addPredictionTerm (const CVTerm &prediction) |
| const CVTermList & | getPrediction () const |
| void | setRetentionTime (RetentionTime rt) |
| const RetentionTime & | getRetentionTime () const |
Predicates | |
| bool | operator== (const IncludeExcludeTarget &rhs) const |
| equality operator More... | |
| bool | operator!= (const IncludeExcludeTarget &rhs) const |
| inequality operator More... | |
Public Member Functions inherited from CVTermList | |
| CVTermList () | |
| Defaults constructor. More... | |
| CVTermList (const CVTermList &rhs) | |
| Copy constructor. More... | |
| virtual | ~CVTermList () |
| Destructor. More... | |
| CVTermList & | operator= (const CVTermList &rhs) |
| Assignment operator. More... | |
| void | setCVTerms (const std::vector< CVTerm > &terms) |
| sets the CV terms More... | |
| void | replaceCVTerm (const CVTerm &cv_term) |
| replaces the specified CV term More... | |
| void | replaceCVTerms (const std::vector< CVTerm > &cv_terms, const String &accession) |
| replaces the specified CV terms using the given accession number More... | |
| void | replaceCVTerms (const Map< String, std::vector< CVTerm > > &cv_term_map) |
| replaces all cv terms with a map (can be obtained via getCVTerms) More... | |
| const Map< String, std::vector < CVTerm > > & | getCVTerms () const |
| returns the accession string of the term More... | |
| void | addCVTerm (const CVTerm &term) |
| adds a CV term More... | |
| bool | operator== (const CVTermList &cv_term_list) const |
| equality operator More... | |
| bool | operator!= (const CVTermList &cv_term_list) const |
| inequality operator More... | |
| bool | hasCVTerm (const String &accession) const |
| checks whether the term has a value More... | |
| bool | empty () const |
| return true if no terms are available More... | |
Public Member Functions inherited from MetaInfoInterface | |
| MetaInfoInterface () | |
| constructor More... | |
| MetaInfoInterface (const MetaInfoInterface &rhs) | |
| copy constructor More... | |
| ~MetaInfoInterface () | |
| destructor More... | |
| MetaInfoInterface & | operator= (const MetaInfoInterface &rhs) |
| assignment operator More... | |
| bool | operator== (const MetaInfoInterface &rhs) const |
| Equality operator. More... | |
| bool | operator!= (const MetaInfoInterface &rhs) const |
| Equality operator. More... | |
| const DataValue & | getMetaValue (const String &name) const |
| returns the value corresponding to a string More... | |
| const DataValue & | getMetaValue (UInt index) const |
| returns the value corresponding to an index More... | |
| bool | metaValueExists (const String &name) const |
| returns if this MetaInfo is set More... | |
| bool | metaValueExists (UInt index) const |
| returns if this MetaInfo is set More... | |
| void | setMetaValue (const String &name, const DataValue &value) |
| sets the DataValue corresponding to a name More... | |
| void | setMetaValue (UInt index, const DataValue &value) |
| sets the DataValue corresponding to an index More... | |
| void | removeMetaValue (const String &name) |
Removes the DataValue corresponding to name if it exists. More... | |
| void | removeMetaValue (UInt index) |
Removes the DataValue corresponding to index if it exists. More... | |
| void | getKeys (std::vector< String > &keys) const |
| fills the given vector with a list of all keys for which a value is set More... | |
| void | getKeys (std::vector< UInt > &keys) const |
| fills the given vector with a list of all keys for which a value is set More... | |
| bool | isMetaEmpty () const |
| returns if the MetaInfo is empty More... | |
| void | clearMetaInfo () |
| removes all meta values More... | |
Protected Member Functions | |
| void | updateMembers_ () |
Protected Member Functions inherited from MetaInfoInterface | |
| void | createIfNotExists_ () |
| creates the MetaInfo object if it does not exist More... | |
Protected Attributes | |
| String | name_ |
| DoubleReal | precursor_mz_ |
| CVTermList | precursor_cv_terms_ |
| DoubleReal | product_mz_ |
| CVTermList | product_cv_terms_ |
| std::vector< CVTermList > | interpretation_list_ |
| String | peptide_ref_ |
| String | compound_ref_ |
| std::vector< Configuration > | configurations_ |
| CVTermList | prediction_ |
| RetentionTime | rts_ |
Protected Attributes inherited from CVTermList | |
| Map< String, std::vector < CVTerm > > | cv_terms_ |
Protected Attributes inherited from MetaInfoInterface | |
| MetaInfo * | meta_ |
| pointer to the MetaInfo object. 0 by default More... | |
Additional Inherited Members | |
Static Public Member Functions inherited from MetaInfoInterface | |
| static MetaInfoRegistry & | metaRegistry () |
| retuns a reference to the MetaInfoRegistry More... | |
This class stores a SRM/MRM transition.
The default values for precursor and product m/z values are set to numeric_limits<DoubleReal>::max(). Default values for precursor an product charge is set to numeric_limits<Int>::max().
default constructor
| IncludeExcludeTarget | ( | const IncludeExcludeTarget & | rhs | ) |
copy constructor
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virtual |
destructor
| void addConfiguration | ( | const Configuration & | configuration | ) |
| void addInterpretation | ( | const CVTermList & | interpretation | ) |
| void addPrecursorCVTerm | ( | const CVTerm & | cv_term | ) |
| void addPredictionTerm | ( | const CVTerm & | prediction | ) |
| void addProductCVTerm | ( | const CVTerm & | cv_term | ) |
| const String& getCompoundRef | ( | ) | const |
| const std::vector<Configuration>& getConfigurations | ( | ) | const |
| const std::vector<CVTermList>& getInterpretations | ( | ) | const |
| const String& getName | ( | ) | const |
| const String& getPeptideRef | ( | ) | const |
| const CVTermList& getPrecursorCVTermList | ( | ) | const |
| DoubleReal getPrecursorMZ | ( | ) | const |
| const CVTermList& getPrediction | ( | ) | const |
| const CVTermList& getProductCVTermList | ( | ) | const |
| DoubleReal getProductMZ | ( | ) | const |
| const RetentionTime& getRetentionTime | ( | ) | const |
| bool operator!= | ( | const IncludeExcludeTarget & | rhs | ) | const |
inequality operator
| IncludeExcludeTarget& operator= | ( | const IncludeExcludeTarget & | rhs | ) |
assignment operator
| bool operator== | ( | const IncludeExcludeTarget & | rhs | ) | const |
equality operator
| void setCompoundRef | ( | const String & | compound_ref | ) |
| void setConfigurations | ( | const std::vector< Configuration > & | configuration | ) |
| void setInterpretations | ( | const std::vector< CVTermList > & | interpretations | ) |
| void setName | ( | const String & | name | ) |
| void setPeptideRef | ( | const String & | peptide_ref | ) |
| void setPrecursorCVTermList | ( | const CVTermList & | list | ) |
| void setPrecursorMZ | ( | DoubleReal | mz | ) |
sets the precursor mz (Q1 value)
| void setPrediction | ( | const CVTermList & | prediction | ) |
| void setProductCVTermList | ( | const CVTermList & | list | ) |
| void setProductMZ | ( | DoubleReal | mz | ) |
| void setRetentionTime | ( | RetentionTime | rt | ) |
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| OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:27 using doxygen 1.8.5 |