#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/LCMS.h>
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| | ~LCMS () |
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| | LCMS (std::string) |
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| | LCMS () |
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| | LCMS (const LCMS *) |
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| | LCMS (const LCMS &) |
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| void | show_info () |
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| LCMS & | operator= (const LCMS &) |
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| void | order_by_mass () |
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| float | compare_feature_mass (const void *, const void *) |
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| void | tag_peaks_with_spectrum_ID () |
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| int | get_nb_common_peaks (int) |
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| void | clear_feature_list () |
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| std::vector< SHFeature > | get_feature_list () |
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| std::vector< SHFeature > * | get_feature_list_reference () |
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| bool | check_feature_list_empty () |
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| std::vector< SHFeature >::iterator | get_feature_list_begin () |
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| std::vector< SHFeature >::iterator | get_feature_list_end () |
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| void | add_feature (SHFeature *IN) |
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| void | remove_feature_by_ID (SHFeature *) |
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| void | remove_feature_by_ID (int) |
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| void | remove_feature (SHFeature *) |
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| void | remove_feature (int i) |
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| std::vector< SHFeature >::iterator | remove_feature_from_list (std::vector< SHFeature >::iterator IN) |
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| unsigned int | get_nb_features () |
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| std::string | get_spec_name () |
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| void | set_spec_name (std::string IN) |
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| int | get_spectrum_ID () |
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| void | set_spectrum_ID (int IN) |
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| void | setFeatureLCMSID () |
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| SHFeature * | find_feature_by_ID (int) |
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| void | remove_raw_spec_name (int ID) |
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| void | add_raw_spec_name (int ID, std::string name) |
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| bool | check_raw_spec_name_empty () |
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std::map< int, std::string >
::iterator | get_raw_spec_name_start () |
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std::map< int, std::string >
::iterator | get_raw_spec_name_end () |
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| std::map< int, std::string > | get_raw_spec_name_map () |
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| int | get_nb_raw_specs () |
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| std::string | get_raw_spec_name (int ID) |
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| bool | check_LCMS_name (std::string) |
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| bool | find_LC_MS_by_ID (int) |
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| void | add_raw_spec_name_map (std::map< int, std::string > IN) |
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| int | get_nb_identified_features () |
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| int | get_nb_identified_features (double PepProb_T) |
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| void | add_alignment_error (double TR, double ERROR_UP, double ERROR_DOWN) |
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| void | get_alignment_error (double, double *, double *) |
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| void | set_MASTER_ID (int IN) |
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| int | get_MASTER_ID () |
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| void add_raw_spec_name |
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int |
ID, |
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std::string |
name |
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) |
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inline |
| void add_raw_spec_name_map |
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std::map< int, std::string > |
IN | ) |
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inline |
| bool check_feature_list_empty |
( |
| ) |
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inline |
| bool check_LCMS_name |
( |
std::string |
| ) |
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| bool check_raw_spec_name_empty |
( |
| ) |
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inline |
| void clear_feature_list |
( |
| ) |
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inline |
| float compare_feature_mass |
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const void * |
, |
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const void * |
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) |
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| bool find_LC_MS_by_ID |
( |
int |
| ) |
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| std::vector<SHFeature>::iterator get_feature_list_begin |
( |
| ) |
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inline |
| std::vector<SHFeature>::iterator get_feature_list_end |
( |
| ) |
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inline |
| std::vector<SHFeature>* get_feature_list_reference |
( |
| ) |
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inline |
| int get_nb_common_peaks |
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int |
| ) |
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| unsigned int get_nb_features |
( |
| ) |
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inline |
| int get_nb_identified_features |
( |
| ) |
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inline |
| int get_nb_identified_features |
( |
double |
PepProb_T | ) |
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inline |
| std::string get_raw_spec_name |
( |
int |
ID | ) |
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inline |
| std::map<int, std::string>::iterator get_raw_spec_name_end |
( |
| ) |
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inline |
| std::map<int, std::string> get_raw_spec_name_map |
( |
| ) |
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inline |
| std::map<int, std::string>::iterator get_raw_spec_name_start |
( |
| ) |
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inline |
| std::string get_spec_name |
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| ) |
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inline |
| void remove_feature |
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int |
i | ) |
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inline |
| void remove_feature_by_ID |
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int |
| ) |
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| std::vector<SHFeature>::iterator remove_feature_from_list |
( |
std::vector< SHFeature >::iterator |
IN | ) |
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inline |
| void remove_raw_spec_name |
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int |
ID | ) |
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inline |
| void set_MASTER_ID |
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int |
IN | ) |
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inline |
| void set_spec_name |
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std::string |
IN | ) |
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inline |
| void set_spectrum_ID |
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int |
IN | ) |
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inline |
| void setFeatureLCMSID |
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| ) |
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| void tag_peaks_with_spectrum_ID |
( |
| ) |
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inline |
| double MINIMAL_PEP_PROPHET_THERSHOLD |
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static |
| std::map<int, std::string> raw_spec_names |
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private |