Filters MS2 spectra based on XIC intensities in control and treatment. Used in RNPxl experiments to reduce candidate spectra.
| potential predecessor tools | RNPxlXICFilter | potential successor tools |
| TOPP_PeakPickerHires | RNPxl |
The command line parameters of this tool are:
RNPxlXICFilter -- Remove MS2 spectra from treatment based on the fold change between control and treatment.
Version: 1.11.1 Nov 14 2013, 11:18:15, Revision: 11976
Usage:
RNPxlXICFilter <options>
Options (mandatory options marked with '*'):
-control <file>* Input mzML file (valid formats: 'mzML')
-treatment <file>* Input mzML file (valid formats: 'mzML')
-fold_change Fold change between XICs (default: '2')
-rt_tol RT tolerance in [s] for finding max peak (whole RT range around RT middle) (default:
'20')
-mz_tol M/z tolerance in [ppm] for finding a peak (default: '10')
-out <file>* Output of the treatment file after XIC filtering. (valid formats: 'mzML')
Common UTIL options:
-ini <file> Use the given TOPP INI file
-threads <n> Sets the number of threads allowed to be used by the TOPP tool (default: '1')
-write_ini <file> Writes the default configuration file
--help Shows options
--helphelp Shows all options (including advanced)
INI file documentation of this tool:
| OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:24 using doxygen 1.8.5 |